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| Registros recuperados: 12 | |
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| Puillandre, Nicolas; Baylac, Michel; Boisselier, Marie-catherine; Cruaud, Corinne; Samadi, Sarah. |
| DNA sequences are currently used to propose primary hypotheses of species delimitation, especially when morphological variability is difficult to assess. In an integrative taxonomy framework, these hypotheses are then compared with other characters, such as morphology or geography, to produce robust species delimitations. For this purpose, the cytochrome oxidase subunit I (COI) gene has been sequenced for almost 50 specimens of the genus Benthomangelia, a deep-sea marine gastropod genus, collected in the South-West Pacific. Five genetic groups, displaying low and high genetic distances respectively within and between groups, were defined. COI hypotheses were compared with both the results obtained with the independent nuclear 28S gene and with an elliptic... |
| Tipo: Text |
Palavras-chave: 28S rRNA; COI gene; DNA taxonomy; Elliptic fourier analysis; Integrative taxonomy; Molluscs. |
| Ano: 2009 |
URL: https://archimer.ifremer.fr/doc/00206/31678/30065.pdf |
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| Delavenne, Juliette; Keszler, Louise; Castelin, Magalie; Lozouet, Pierre; Maestrati, Philippe; Samadi, Sarah. |
| Based on the specimens collected during three deep-sea cruises, and deposited at the Muséum National d’Histoire Naturelle (MNHN) in Paris, we analysed the diversity of benthic communities within the EEZ of French Polynesia. The literature and the MNHN database allowed us to inventory 471 species of invertebrates, among which 169 were newly described. We mainly found data for Mollusca, Crustacea, Brachiopoda and Crinoidea. We also found samples from other taxa, which still remain unidentified within the collections of the MNHN. Although this inventory is incomplete, we demonstrate that the deep waters of French Polynesia host unique benthic communities and endemic species. Using diversity and multivariate analyses, we show that the deep-sea benthic... |
| Tipo: Text |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00494/60530/63993.pdf |
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| Pante, Eric; France, Scott C.; Couloux, Arnaud; Cruaud, Corinne; Mcfadden, Catherine S.; Samadi, Sarah; Watling, Les. |
| The diversity, ubiquity and prevalence in deep waters of the octocoral family Chrysogorgiidae Verrill, 1883 make it noteworthy as a model system to study radiation and diversification in the deep sea. Here we provide the first comprehensive phylogenetic analysis of the Chrysogorgiidae, and compare phylogeny and depth distribution. Phylogenetic relationships among 10 of 14 currently-described Chrysogorgiidae genera were inferred based on mitochondrial (mtMutS, cox1) and nuclear (18S) markers. Bathymetric distribution was estimated from multiple sources, including museum records, a literature review, and our own sampling records (985 stations, 2345 specimens). Genetic analyses suggest that the Chrysogorgiidae as currently described is a polyphyletic family.... |
| Tipo: Text |
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| Ano: 2012 |
URL: https://archimer.ifremer.fr/doc/00467/57831/60158.pdf |
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| Lorion, Julien; Halary, Sebastien; Do Nasciment, Joana; Samadi, Sarah; Couloux, Arnaud; Duperron, Sebastien. |
| Small mytilids of the genus Ildas are related to the large mussels found worldwide at deep-sea hydrothermal vents and cold seeps. They are therefore keys to a better understanding of the colonization of vents and seeps by symbiont-bearing organisms, but still little is known about their biology. For this study, specimens of a mytilid referred to the genus Idas were collected from various substrates in a cold seep area near the Nile deep sea fan. Based on molecular and morphological data, all specimens are confirmed to belong to a single species of the genus Idas, which was previously shown to host six distinct bacterial symbionts. Its larval shell characteristics indicate a long planktonic phase, which could explain its close relationship to a mussel... |
| Tipo: Text |
Palavras-chave: Idas; Planktotrophy; Organic falls; Cold seeps; Symbiosis. |
| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00133/24425/22436.pdf |
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| Pante, Eric; Corbari, Laure; Thubaut, Justine; Chan, Tin-yam; Mana, Ralph; Boisselier, Marie-catherine; Bouchet, Philippe; Samadi, Sarah. |
| Little is known of New Guinea's deep benthic communities. In fall 2010, the Museum national d'Histoire naturelle, Institut de Recherche pour le Developpement, and University of Papua New Guinea spearheaded an international three-leg cruise, BioPapua, aimed at exploring the deep waters of eastern Papua New Guinea and its satellite islands. Special attention was given to faunal assemblages associated with sunken wood and decomposing vegetation as well as seamount summits and slopes. In this article, we review the information available on the deep ecosystems of Papua New Guinea and summarize preliminary results of the BioPapua cruise. |
| Tipo: Text |
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| Ano: 2012 |
URL: https://archimer.ifremer.fr/doc/00161/27267/25479.pdf |
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| Collot, Julien; Patriat, Martin; Rouillard, Pierrick; Samadi, Sarah; Gardes, Lionel; Pelletier, Bernard; Loubersac, Lionel. |
| This article of the number 10 of Tai Kona is the natural complement to the article appeared under the number 8, dedicated to the submarine geodiversity of the New Caledonian EEZ. The first article notably put the bases of knowledge on the history, the origins and the specificities of the geodiversity of the maritime spaces of the New Caledonian EEZ. The present article focuses on four of the major stakes which are put: 1/ the scientific ones relative to an exceptional submarine geologic context, 2 /the economic ones connected to such a favorable geologic context and to mineral resources exploitation perspectives which are no more domain of the utopia, 3/ the major environmental ones with the existence of a semi deep and deep major biodiversity and 4/ the... |
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| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00209/32013/30443.pdf |
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| Lecointre, Guillaume; Ameziane, Nadia; Boisselier, Marie-catherine; Bonillo, Celine; Busson, Frederic; Causse, Romain; Chenuil, Anne; Couloux, Arnaud; Coutanceau, Jean-pierre; Cruaud, Corinne; D'Udekem D'Acoz, Cedric; De Ridder, Chantal; Denys, Gael; Dettai, Agnes; Duhamel, Guy; Eleaume, Marc; Feral, Jean-pierre; Gallut, Cyril; Havermans, Charlotte; Held, Christoph; Hemery, Lenaig; Lautredou, Anne-claire; Martin, Patrick; Ozouf-costaz, Catherine; Pierrat, Benjamin; Pruvost, Patrice; Puillandre, Nicolas; Samadi, Sarah; Saucede, Thomas; Schubart, Christoph; David, Bruno. |
| There has been a significant body of literature on species flock definition but not so much about practical means to appraise them. We here apply the five criteria of Eastman and McCune for detecting species flocks in four taxonomic components of the benthic fauna of the Antarctic shelf: teleost fishes, crinoids (feather stars), echinoids (sea urchins) and crustacean arthropods. Practical limitations led us to prioritize the three historical criteria (endemicity, monophyly, species richness) over the two ecological ones (ecological diversity and habitat dominance). We propose a new protocol which includes an iterative fine-tuning of the monophyly and endemicity criteria in order to discover unsuspected flocks. As a result nine "full" species flocks... |
| Tipo: Text |
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| Ano: 2013 |
URL: https://archimer.ifremer.fr/doc/00296/40754/39754.pdf |
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| Sanders, Malcolm T.; Merle, Didier; Bouchet, Philippe; Castelin, Magalie; Beu, Alan G.; Samadi, Sarah; Puillandre, Nicolas. |
| Bursa granularis (Roding, 1798) is a tonnoidean gastropod that is regarded as broadly distributed throughout the Indo-Pacific and tropical western Atlantic. Because of its variable shell it has received no less than thirteen names, now all synonymized under the name B. granularis. We sequenced a fragment of the cox1 gene for 82 specimens covering a large part of its distribution and most type localities. Two delimitation methods were applied, one based on genetic distance (ABGD) and one based on phylogenetic trees (GMYC). All analyses suggest that specimens identified as B. granularis comprise four distinct species: one limited to the tropical western Atlantic, another to southwestern Western Australia and two in the Indo-Pacific (from the Red Sea to the... |
| Tipo: Text |
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| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00476/58800/61531.pdf |
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| Samadi, Sarah; Puillandre, Nicolas; Pante, Eric; Boisselier, Marie-catherine; Corbari, Laure; Chen, Wei-jen; Maestrati, Philippe; Mana, Ralph; Thubaut, Justine; Zuccon, Dario; Hourdez, Stephane. |
| The deep-sea part of the ‘Papua Niugini Biodiversity Expedition’ surveyed the deep-sea environments along the coasts of New Guinea Island in the Bismarck Sea, from the Vitiaz Strait to the border between Papua New Guinea (PNG) and Irian Jaya. This expedition was a follow-up of the BIOPAPUA cruise (2010) that gave some of the first insights into the diversity of the deep-sea fauna of the Bismarck and Solomon Seas for environments other than deep-sea hydrothermal vents. The main aims of the cruise were to survey the diversity of the fauna of (i) hard bottoms that are typically found on deep seamounts, (ii) Astrolabe Bay from 200 m to about 1000 m, (iii) the chemosynthetic environments of the deep sea, including cold-seep environments and plant debris.... |
| Tipo: Text |
Palavras-chave: Bathymodiolinae; Cold-seep; Deep-sea; Siboglinidae. |
| Ano: 2015 |
URL: https://archimer.ifremer.fr/doc/00276/38703/37210.pdf |
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| Lorion, Julien; Duperron, Sebastien; Gros, Olivier; Cruaud, Corinne; Samadi, Sarah. |
| Bathymodiolin mussels occur at hydrothermal vents and cold seeps, where they thrive thanks to symbiotic associations with chemotrophic bacteria. Closely related genera Idas and Adipicola are associated with organic falls, ecosystems that have been suggested as potential evolutionary 'stepping stones' in the colonization of deeper and more sulphide-rich environments. Such a scenario should result from specializations to given environments from species with larger ecological niches. This study provides molecular-based evidence for the existence of two mussel species found both on sunken wood and bones. Each species specifically harbours one bacterial phylotype corresponding to thioautotrophic bacteria related to other bathymodiolin symbionts. Phylogenetic... |
| Tipo: Text |
Palavras-chave: Idas; Adipicola; Molecular taxonomy; Organic falls; Symbiosis; Thioautotrophy. |
| Ano: 2009 |
URL: https://archimer.ifremer.fr/doc/00206/31680/30056.pdf |
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| Pante, Eric; Puillandre, Nicolas; Viricel, Amélia; Arnaud-haond, Sophie; Aurelle, Didier; Castelin, Magalie; Chenuil, Anne; Destombe, Christophe; Forcioli, Didier; Valero, Myriam; Viard, Frederique; Samadi, Sarah. |
| Connectivity among populations determines the dynamics and evolution of populations, and its assessment is essential in ecology in general and in conservation biology in particular. The robust basis of any ecological study is the accurate delimitation of evolutionary units, such as populations, metapopulations and species. Yet a disconnect still persists between the work of taxonomists describing species as working hypotheses and the use of species delimitation by molecular ecologists interested in describing patterns of gene flow. This problem is particularly acute in the marine environment where the inventory of biodiversity is relatively delayed, while for the past two decades, molecular studies have shown a high prevalence of cryptic species. In this... |
| Tipo: Text |
Palavras-chave: Connectivity; Marine organisms; Molecular systematics; Taxonomy. |
| Ano: 2015 |
URL: https://archimer.ifremer.fr/doc/00248/35952/35301.pdf |
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| Thubaut, Justine; Puillandre, Nicolas; Faure, Baptiste; Cruaud, Corinne; Samadi, Sarah. |
| Bathymodiolinae are giant mussels that were discovered at hydrothermal vents and harboring chemosynthetic symbionts. Due to their close phylogenetic relationship with seep species and tiny mussels from organic substrates, it was hypothesized that they gradually evolved from shallow to deeper environments, and specialized in decaying organic remains, then in seeps, and finally colonized deep-sea vents. Here, we present a multigene phylogeny that reveals that most of the genera are polyphyletic and/or paraphyletic. The robustness of the phylogeny allows us to revise the genus-level classification. Organic remains are robustly supported as the ancestral habitat for Bathymodiolinae. However, rather than a single step toward colonization of vents and seeps,... |
| Tipo: Text |
Palavras-chave: Bathymodiolinae; Chemosynthetic ecosystem; Deep-sea; Evolution. |
| Ano: 2013 |
URL: https://archimer.ifremer.fr/doc/00218/32957/31622.pdf |
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| Registros recuperados: 12 | |
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